C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin-like, containing PHD and RING finger domains, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113038 Uhrf1-002 ENSMUSG00000001228 10090 + 17:56303400-56323486 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaENSMUST00000113038
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000113038 0.972±0.55 0.852±0.25 0.410±0.07 3.320±0.45 1.344±0.79 3.339±0.51 0.321±0.20 7.846±6.32 0.759±0.00 0.083±0.05 6.197±2.33 10.324±6.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00029M CIL_00029M_0002 CGP 17:56294113-56323486
CIL_0005GV CIL_0005GV_0003 CGP 17:56303321-56402870

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0000791 ISS euchromatin
GO:0000792 IDA heterochromatin
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005657 IDA replication fork
GO:0005720 IDA nuclear heterochromatin
GO:0006281 IEA DNA repair
GO:0006351 IEA transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0008270 ISS zinc ion binding
GO:0008283 TAS cell proliferation
GO:0010216 IMP maintenance of DNA methylation
GO:0010390 IDA histone monoubiquitination
GO:0016363 IDA nuclear matrix
GO:0016574 ISS histone ubiquitination
GO:0016874 IEA ligase activity
GO:0031493 IDA nucleosomal histone binding
GO:0035064 IDA methylated histone binding
GO:0042393 ISS histone binding
GO:0042787 ISS protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0042802 IPI identical protein binding
GO:0044729 IDA hemi-methylated DNA-binding
GO:0051865 ISS protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000012551 uhrf1-201 protein_coding Danio_rerio 0 388
ENSDART00000122573 uhrf1-202 protein_coding Danio_rerio 0 388
ENSDART00000126951 uhrf1-203 protein_coding Danio_rerio 0 388
ENSDART00000121555 uhrf1-001 protein_coding Danio_rerio 0 388

Loading