C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005GV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000091448-ENSDARG00000042729 CGP 7955 22:3857038-3981093
GeneTranscriptPositionBiotype
ENSDARG00000042729 (kdm4b)
lysine (K)-specific demethylase 4B 		ENSDART00000034084 (kdm4b-201) 3898299-3980390 protein_coding
ENSDART00000128161 (kdm4b-001) 3888478-3981093 protein_coding
CIL_0005GV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000276043-ENSG00000127663 CGP 9606 19:4903080-5153595
GeneTranscriptPositionBiotype
ENSG00000127663 (KDM4B)
lysine (K)-specific demethylase 4B 		ENST00000159111 (KDM4B-001) 4969121-5153595 protein_coding
ENST00000381759 (KDM4B-011) 4969132-5113340 protein_coding
ENST00000536461 (KDM4B-002) 5016325-5153105 protein_coding
ENST00000588166 (KDM4B-003) 5135536-5138470 processed_transcript
ENST00000588337 (KDM4B-004) 4969114-5041181 protein_coding
ENST00000588361 (KDM4B-012) 5082452-5141503 protein_coding
ENST00000588961 (KDM4B-008) 5080688-5110734 processed_transcript
ENST00000589104 (KDM4B-007) 5070618-5151924 retained_intron
ENST00000592159 (KDM4B-010) 5112358-5119682 processed_transcript
ENST00000592175 (KDM4B-005) 5046998-5082437 processed_transcript
ENST00000611640 (KDM4B-201) 4969113-5153595 protein_coding
ENST00000624683 (KDM4B-009) 5074091-5079166 TEC
ENSG00000273632 (AC027319.3)
 ENST00000622687 (AC027319.3-201) 4920332-4920442 miRNA
ENSG00000276043 (UHRF1)
ubiquitin-like with PHD and ring finger domains 1 		ENST00000612630 (UHRF1-006) 4903080-4962154 protein_coding
ENST00000613817 (UHRF1-002) 4909498-4961171 protein_coding
ENST00000615884 (UHRF1-005) 4910146-4960961 protein_coding
ENST00000616255 (UHRF1-004) 4910375-4960952 protein_coding
ENST00000620565 (UHRF1-001) 4909430-4962150 protein_coding
ENST00000622802 (UHRF1-003) 4910367-4961132 protein_coding
ENST00000624301 (UHRF1-201) 4909498-4962151 protein_coding
CIL_0005GV_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000001228-ENSMUSG00000024201 CGP 10090 17:56303321-56402870
GeneTranscriptPositionBiotype
ENSMUSG00000001228 (Uhrf1)
ubiquitin-like, containing PHD and RING finger domains, 1 		ENSMUST00000001258 (Uhrf1-001) 56303321-56323486 protein_coding
ENSMUST00000113035 (Uhrf1-003) 56304313-56323486 protein_coding
ENSMUST00000113038 (Uhrf1-002) 56303400-56323486 protein_coding
ENSMUST00000113039 (Uhrf1-004) 56304348-56323486 protein_coding
ENSMUST00000137876 (Uhrf1-006) 56312663-56313176 retained_intron
ENSMUST00000139654 (Uhrf1-007) 56318026-56322339 retained_intron
ENSMUST00000142387 (Uhrf1-005) 56304407-56310719 protein_coding
ENSMUSG00000024201 (Kdm4b)
lysine (K)-specific demethylase 4B 		ENSMUST00000025036 (Kdm4b-001) 56326074-56402864 protein_coding
ENSMUST00000086835 (Kdm4b-002) 56326091-56402859 protein_coding
ENSMUST00000132363 (Kdm4b-005) 56372295-56386119 processed_transcript
ENSMUST00000139679 (Kdm4b-004) 56326062-56356056 protein_coding
ENSMUST00000141507 (Kdm4b-003) 56393920-56402870 protein_coding
ENSMUST00000147489 (Kdm4b-006) 56393517-56393785 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005GV_0001ENSDARG00000042729ENSDART00000034084ENSDART00000128161CIL_0005GV_0002ENSG00000127663ENST00000159111ENST00000381759ENST00000536461ENST00000588166ENST00000588337ENST00000588361ENST00000588961ENST00000589104ENST00000592159ENST00000592175ENST00000611640ENST00000624683ENSG00000273632ENST00000622687ENSG00000276043ENST00000612630ENST00000613817ENST00000615884ENST00000616255ENST00000620565ENST00000622802ENST00000624301CIL_0005GV_0003ENSMUSG00000001228ENSMUST00000001258ENSMUST00000113035ENSMUST00000113038ENSMUST00000113039ENSMUST00000137876ENSMUST00000139654ENSMUST00000142387ENSMUSG00000024201ENSMUST00000025036ENSMUST00000086835ENSMUST00000132363ENSMUST00000139679ENSMUST00000141507ENSMUST00000147489
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005GV_0001ENSDARG00000042729ENSDART00000034084ENSDART00000128161CIL_0005GV_0002ENSG00000127663ENST00000159111ENST00000381759ENST00000536461ENST00000589104ENST00000611640ENST00000624683ENSG00000273632ENST00000622687ENSG00000276043ENST00000612630ENST00000613817ENST00000615884ENST00000616255ENST00000622802ENST00000624301CIL_0005GV_0003ENSMUSG00000001228ENSMUST00000001258ENSMUST00000113035ENSMUST00000113038ENSMUST00000113039ENSMUST00000139654ENSMUST00000142387ENSMUSG00000024201ENSMUST00000025036ENSMUST00000086835ENSMUST00000139679ENSMUST00000141507
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000042729 ENSDART00000034084 N/A N/A N/A 3.144±0.00 N/A N/A 2.372±0.35 2.486±0.84 0.848±0.00 N/A N/A N/A N/A N/A
ENSDART00000128161 N/A N/A N/A 10.560±6.84 N/A N/A 3.696±4.23 3.495±0.00 0.852±0.00 N/A 8.428±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000127663 ENST00000159111 N/A 3.674±0.00 0.525±0.00 2.684±1.70 4.989±0.00 1.479±0.58 1.547±1.45 5.382±0.00 1.964±0.37 0.366±0.00 7.674±6.50 3.161±1.20 5.290±1.26 2.904±1.22
ENST00000381759 N/A N/A N/A N/A 1.123±0.00 N/A 0.345±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000536461 N/A N/A N/A N/A N/A 0.493±0.00 N/A N/A N/A N/A N/A 2.394±0.00 4.106±0.00 2.621±0.00
ENST00000588166 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589104 N/A N/A N/A N/A 1.084±0.00 N/A N/A N/A N/A N/A 1.272±0.00 1.309±0.00 N/A 3.444±0.00
ENST00000592159 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611640 3.626±0.00 1.691±0.00 N/A 1.546±0.00 1.691±0.00 N/A 3.001±0.00 2.718±0.00 2.902±0.00 1.763±0.00 2.048±0.00 3.004±2.76 3.464±1.45 3.336±0.00
ENST00000624683 N/A N/A N/A N/A N/A N/A N/A 1.361±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000273632 ENST00000622687 N/A 2.571±0.00 N/A 0.321±0.00 0.303±0.00 N/A N/A N/A N/A N/A N/A 19.194±0.00 N/A 0.530±0.00
ENSG00000276043 ENST00000612630 0.317±0.00 0.809±0.00 N/A 0.717±0.00 0.496±0.00 0.315±0.00 0.159±0.00 0.180±0.00 0.069±0.00 0.110±0.00 0.036±0.00 0.188±0.00 0.714±0.00 1.760±0.00
ENST00000613817 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.088±0.00 N/A N/A N/A N/A
ENST00000615884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A N/A N/A
ENST00000616255 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.167±0.00 N/A N/A N/A N/A
ENST00000620565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622802 N/A N/A N/A N/A N/A N/A 0.047±0.03 N/A 0.023±0.00 0.098±0.00 N/A N/A N/A 1.165±0.00
ENST00000624301 N/A N/A N/A 0.342±0.24 1.086±0.00 1.040±0.00 0.093±0.03 N/A 0.055±0.00 0.110±0.06 N/A 4.539±2.93 1.614±0.62 2.523±1.58
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001228 ENSMUST00000001258 2.950±2.51 0.459±0.00 1.276±0.00 3.934±1.23 1.245±0.61 3.407±1.29 0.195±0.04 0.260±0.09 31.605±17.05 0.739±0.32 0.073±0.00 5.253±2.65 7.866±1.17 N/A
ENSMUST00000113035 0.170±0.00 N/A N/A N/A N/A N/A N/A 0.215±0.00 0.097±0.06 N/A N/A N/A N/A 4.772±1.35
ENSMUST00000113038 0.972±0.55 0.852±0.25 0.410±0.07 3.320±0.45 1.344±0.79 3.339±0.51 N/A 0.321±0.20 7.846±6.32 0.759±0.00 0.083±0.05 6.197±2.33 10.324±6.91 N/A
ENSMUST00000113039 1.969±1.18 0.678±0.00 0.973±0.26 5.478±3.83 0.962±0.17 1.504±0.13 0.260±0.00 0.385±0.14 20.748±14.10 0.544±0.11 0.208±0.16 6.416±2.20 11.507±10.47 14.108±5.96
ENSMUST00000137876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139654 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.095±0.01 N/A N/A N/A
ENSMUST00000142387 N/A N/A N/A N/A N/A N/A N/A N/A 0.072±0.00 N/A N/A 23.931±0.00 42.820±39.29 53.415±0.00
ENSMUSG00000024201 ENSMUST00000025036 8.916±0.81 7.462±1.80 7.985±1.18 16.431±9.98 8.868±4.51 8.367±2.69 3.411±0.87 4.896±0.54 2.198±0.50 6.251±1.78 3.863±0.38 12.608±5.75 5.082±2.55 1.716±0.40
ENSMUST00000086835 N/A N/A N/A N/A 1.296±0.00 N/A N/A N/A 0.454±0.00 N/A 0.983±0.00 N/A N/A N/A
ENSMUST00000132363 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139679 N/A 16.764±3.59 N/A 14.431±0.00 N/A N/A N/A 4.636±0.00 2.475±0.38 8.118±0.00 N/A 13.935±4.52 7.194±1.17 N/A
ENSMUST00000141507 2.779±0.20 7.200±1.25 3.923±0.46 6.470±0.00 2.197±0.00 4.083±0.70 2.333±0.33 1.868±0.16 1.219±0.29 3.623±0.93 N/A 5.511±1.71 2.141±0.84 3.495±0.52
ENSMUST00000147489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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