C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin-like, containing PHD and RING finger domains, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113039 Uhrf1-004 ENSMUSG00000001228 10090 + 17:56304348-56323486 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113039
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113039 1.969±1.18 0.678±0.00 0.973±0.26 5.478±3.83 0.962±0.17 1.504±0.13 0.260±0.00 0.385±0.14 20.748±14.10 0.544±0.11 0.208±0.16 6.416±2.20 11.507±10.47 14.108±5.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00029M CIL_00029M_0002 CGP 17:56294113-56323486
CIL_0005GV CIL_0005GV_0003 CGP 17:56303321-56402870

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0000791 ISS euchromatin
GO:0000792 IDA heterochromatin
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005657 IDA replication fork
GO:0005720 IDA nuclear heterochromatin
GO:0006281 IEA DNA repair
GO:0006351 IEA transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0008270 ISS zinc ion binding
GO:0008283 TAS cell proliferation
GO:0010216 IMP maintenance of DNA methylation
GO:0010390 IDA histone monoubiquitination
GO:0016363 IDA nuclear matrix
GO:0016574 ISS histone ubiquitination
GO:0016874 IEA ligase activity
GO:0031493 IDA nucleosomal histone binding
GO:0035064 IDA methylated histone binding
GO:0042393 ISS histone binding
GO:0042787 ISS protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0042802 IPI identical protein binding
GO:0044729 IDA hemi-methylated DNA-binding
GO:0051865 ISS protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000012551 uhrf1-201 protein_coding Danio_rerio 0 388
ENSDART00000122573 uhrf1-202 protein_coding Danio_rerio 0 388
ENSDART00000126951 uhrf1-203 protein_coding Danio_rerio 0 388
ENSDART00000121555 uhrf1-001 protein_coding Danio_rerio 0 388

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