C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 5C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000127053 kdm5c-001 ENSDARG00000006124 7955 + 8:38095710-38138758 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000127053
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000127053 6.426±5.23 7.355±3.89 10.413±0.00 1.342±0.00 2.009±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062O CIL_00062O_0001 CGP 8:38060407-38138758

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0043524 IMP negative regulation of neuron apoptotic process
GO:0046872 IEA metal ion binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000375379 KDM5C-006 protein_coding Homo_sapiens 0 782
ENST00000375383 KDM5C-007 protein_coding Homo_sapiens 0 782
ENST00000375401 KDM5C-005 protein_coding Homo_sapiens 0 782
ENST00000404049 KDM5C-009 protein_coding Homo_sapiens 0 782
ENST00000452825 KDM5C-201 protein_coding Homo_sapiens 0 782
ENST00000497100 KDM5C-008 retained_intron Homo_sapiens 0 632
ENST00000497995 KDM5C-014 retained_intron Homo_sapiens 1e-23 113

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