C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MAD homolog 5 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000129079 smad5-201 ENSDARG00000037238 7955 - 14:27476300-27507271 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000129079
Transcript ID Brain Heart Kidney Muscle
ENSDART00000129079 1.616±0.56 16.248±6.63 30.519±21.53 2.626±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001947 IMP heart looping
GO:0003143 IMP embryonic heart tube morphogenesis
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007179 IEA transforming growth factor beta receptor signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0007368 IMP determination of left/right symmetry
GO:0009880 IMP embryonic pattern specification
GO:0009953 IMP dorsal/ventral pattern formation
GO:0030509 IMP BMP signaling pathway
GO:0036342 IMP post-anal tail morphogenesis
GO:0043049 IEP otic placode formation
GO:0046872 IEA metal ion binding
GO:0048262 IGI determination of dorsal/ventral asymmetry
GO:0048264 IMP determination of ventral identity
GO:0048514 IGI blood vessel morphogenesis
GO:0060022 IMP hard palate development
GO:0060030 IMP dorsal convergence
GO:2000223 IMP regulation of BMP signaling pathway involved in heart jogging

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029371 Smad9-001 protein_coding Mus_musculus 0 335
ENSMUST00000066091 Smad1-001 protein_coding Mus_musculus 0 850
ENSMUST00000109885 Smad1-002 protein_coding Mus_musculus 0 760

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