C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulatory factor X, 2 (influences HLA class II expression)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000359161 RFX2-004 ENSG00000087903 9606 - 19:5993517-6049232 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartLiverLungMuscleOvaryPlacentaTestisENST00000359161
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000359161 1.000±0.00 0.665±0.00 0.145±0.00 0.820±0.48 1.764±0.00 0.299±0.00 0.462±0.00 4.231±0.00 0.141±0.09 1.874±1.27 0.505±0.00 21.353±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GQ CIL_0005GQ_0002 CGP 19:5993164-6199572

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002444 Rfx2-201 protein_coding Mus_musculus 0 2056
ENSMUST00000086801 Rfx2-202 protein_coding Mus_musculus 0 1578
ENSDART00000122943 rfx2-201 protein_coding Danio_rerio 0 767
ENSDART00000029939 rfx2-001 protein_coding Danio_rerio 0 767
ENSDART00000041236 rfx3-201 protein_coding Danio_rerio 0 577
ENSMUST00000005600 Rfx1-201 protein_coding Mus_musculus 0 553
ENSDART00000129205 rfx1a-201 protein_coding Danio_rerio 0 477
ENSDART00000012335 rfx1a-001 protein_coding Danio_rerio 0 477
ENSDART00000133141 rfx2-002 protein_coding Danio_rerio 0 209
ENSDART00000132218 rfx2-004 protein_coding Danio_rerio 6e-30 137
ENSDART00000147634 rfx2-003 protein_coding Danio_rerio 0.000000000001 81

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