C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L22-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000136871 rpl22l1-002 ENSDARG00000010244 7955 - 24:27271784-27276443 nonsense_mediated_decay

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverMuscleENSDART00000136871
Transcript ID Liver Muscle
ENSDART00000136871 11.808±0.00 5.819±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00049R CIL_00049R_0001 CGP 24:27271784-27281947

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103191 Rpl22-001 protein_coding Mus_musculus 0.000000004 66
ENSMUST00000118652 Rpl22-ps1-001 processed_pseudogene Mus_musculus 0.000000003 66
ENSMUST00000126519 Rpl22-004 processed_transcript Mus_musculus 0.000000004 66
ENSMUST00000127659 Rpl22-005 processed_transcript Mus_musculus 0.000000006 66
ENSMUST00000139685 Rpl22-002 protein_coding Mus_musculus 0.00000002 66
ENSMUST00000142735 Rpl22-003 processed_transcript Mus_musculus 0.000000005 66
ENSMUST00000150485 Rpl22-006 processed_transcript Mus_musculus 0.00000002 64
ENSMUST00000188151 Rpl22-201 protein_coding Mus_musculus 0.00000002 66

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