C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L22
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139685 Rpl22-002 ENSMUSG00000028936 10090 + 4:152325867-152334071 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000139685
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000139685 13.039±5.48 20.410±3.82 9.992±6.30 20.585±2.16 2.685±0.00 12.852±5.61 9.575±0.00 17.775±1.51 8.969±2.30 20.718±7.00 26.038±0.00 18.366±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 ISS cytoplasm
GO:0005840 IDA ribosome
GO:0005925 IEA focal adhesion
GO:0006412 IEA translation
GO:0008201 IDA heparin binding
GO:0022625 IEA cytosolic large ribosomal subunit
GO:0030529 ISO ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding
GO:0046632 IMP alpha-beta T cell differentiation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000079984 rpl22l1-001 protein_coding Danio_rerio 2e-33 148
ENSDART00000136871 rpl22l1-002 nonsense_mediated_decay Danio_rerio 0.00000002 66
ENST00000234875 RPL22-001 protein_coding Homo_sapiens 0 577
ENST00000392735 RPL22P19-001 transcribed_processed_pseudogene Homo_sapiens 0 331
ENST00000395439 RPL22P22-001 processed_pseudogene Homo_sapiens 0 307
ENST00000401483 AC114776.1-001 processed_pseudogene Homo_sapiens 0 364
ENST00000407054 RP11-63K6.4-001 processed_pseudogene Homo_sapiens 0 206
ENST00000413694 CTA-253N17.1-001 processed_pseudogene Homo_sapiens 0 237
ENST00000418623 RP11-641D5.1-001 processed_pseudogene Homo_sapiens 0 390
ENST00000419150 RP11-439A17.5-001 processed_pseudogene Homo_sapiens 0 287
ENST00000422106 RPL22P5-001 processed_pseudogene Homo_sapiens 0 283
ENST00000430042 RP11-38J22.2-001 processed_pseudogene Homo_sapiens 0 283
ENST00000434894 RPL22P11-001 processed_pseudogene Homo_sapiens 0 374
ENST00000438729 RP11-753C18.8-001 processed_pseudogene Homo_sapiens 0 270
ENST00000445689 RP11-430L17.1-001 processed_pseudogene Homo_sapiens 0 337
ENST00000462296 RPL22-008 protein_coding Homo_sapiens 0 283
ENST00000465335 RPL22-006 protein_coding Homo_sapiens 0 278
ENST00000465387 RPL22-005 protein_coding Homo_sapiens 0 394
ENST00000469811 RP11-488C13.1-001 processed_pseudogene Homo_sapiens 0 401
ENST00000471204 RPL22-007 protein_coding Homo_sapiens 0 433
ENST00000480427 RPL22P19-002 processed_transcript Homo_sapiens 0 366
ENST00000480661 RPL22-003 retained_intron Homo_sapiens 0 531
ENST00000484532 RPL22-004 protein_coding Homo_sapiens 0 279
ENST00000497965 RPL22-002 protein_coding Homo_sapiens 0 477

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