C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sex comb on midleg homolog 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000087 Scmh1-001 ENSMUSG00000000085 10090 + 4:120405307-120530184 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000087
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000087 3.272±1.31 3.378±0.56 7.688±0.89 3.986±0.89 1.936±0.44 1.874±0.29 4.831±0.84 2.134±0.92 1.618±0.67 4.461±0.85 3.144±0.69 3.763±2.17 1.179±0.46 17.217±7.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000876 CIL_000876_0002 VISTA 4:120091603-120693946
CIL_0009C0 CIL_0009C0_0002 VISTA 4:120091667-120696253

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA:IC nucleus
GO:0006338 IMP chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0007283 IGI spermatogenesis
GO:0009952 IMP anterior/posterior pattern specification
GO:0010369 IDA chromocenter
GO:0016458 ISS gene silencing
GO:0045892 IC negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000326197 SCMH1-005 protein_coding Homo_sapiens 0 2761
ENST00000337495 SCMH1-003 protein_coding Homo_sapiens 0 2050
ENST00000361191 SCMH1-201 protein_coding Homo_sapiens 0 1914
ENST00000361705 SCMH1-202 protein_coding Homo_sapiens 0 1917
ENST00000372595 SCMH1-004 protein_coding Homo_sapiens 0 2519
ENST00000372596 SCMH1-002 protein_coding Homo_sapiens 0 2045
ENST00000372597 SCMH1-001 protein_coding Homo_sapiens 0 1917
ENST00000397171 SCMH1-203 protein_coding Homo_sapiens 0 2045
ENST00000397174 SCMH1-204 protein_coding Homo_sapiens 0 2645
ENST00000402904 SCMH1-205 protein_coding Homo_sapiens 0 2514
ENST00000456518 SCMH1-012 protein_coding Homo_sapiens 0 1129
ENST00000460215 SCMH1-010 processed_transcript Homo_sapiens 2.94273e-44 182
ENST00000472037 SCMH1-006 protein_coding Homo_sapiens 0 545
ENST00000482530 SCMH1-009 processed_transcript Homo_sapiens 0 595
ENST00000489421 SCMH1-007 processed_transcript Homo_sapiens 0 351
ENST00000498793 SCMH1-008 processed_transcript Homo_sapiens 0 538

Loading