C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 26 (anion exchanger), member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000340010 SLC26A3-002 ENSG00000091138 9606 - 7:107765472-107803207 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLiverOvaryPlacentaTestisENST00000340010
Transcript ID Brain Colon Heart Liver Ovary Placenta Testis
ENST00000340010 0.034±0.00 83.806±83.27 0.008±0.00 0.206±0.00 0.010±0.00 0.022±0.00 0.471±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZV CIL_0008ZV_0001 VISTA 7:107646717-108248447

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003712 TAS transcription cofactor activity
GO:0005215 TAS transporter activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006811 TAS ion transport
GO:0006820 TAS anion transport
GO:0006821 IEA chloride transport
GO:0007588 TAS excretion
GO:0008271 IEA secondary active sulfate transmembrane transporter activity
GO:0008272 IEA sulfate transport
GO:0015106 ISS bicarbonate transmembrane transporter activity
GO:0015108 ISS chloride transmembrane transporter activity
GO:0015116 IEA sulfate transmembrane transporter activity
GO:0015301 IEA anion:anion antiporter activity
GO:0015701 IEA bicarbonate transport
GO:0016020 ISS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016324 IEA apical plasma membrane
GO:0031526 IEA brush border membrane
GO:0048240 ISS sperm capacitation
GO:0051454 ISS intracellular pH elevation
GO:0055085 TAS:IEA transmembrane transport
GO:0060081 ISS membrane hyperpolarization
GO:0071320 ISS cellular response to cAMP
GO:0097225 ISS sperm midpiece
GO:1902358 IEA sulfate transmembrane transport
GO:1902476 IEA chloride transmembrane transport
GO:2001141 TAS regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001254 Slc26a3-001 protein_coding Mus_musculus 0 1938
ENSMUST00000171616 Slc26a3-006 nonsense_mediated_decay Mus_musculus 0 1186
ENSMUST00000168209 Slc26a3-002 retained_intron Mus_musculus 0 453
ENSMUST00000167432 Slc26a3-005 protein_coding Mus_musculus 0 433
ENSMUST00000165816 Slc26a3-004 retained_intron Mus_musculus 0 300
ENSMUST00000109275 Slc26a3-007 protein_coding Mus_musculus 0 209

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