C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin beta 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001327 Itgb7-001 ENSMUSG00000001281 10090 - 15:102215995-102231935 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001327
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001327 2.886±1.04 0.845±0.44 2.845±0.09 0.321±0.00 26.596±10.52 3.286±1.25 0.752±0.11 1.647±0.93 0.943±0.65 10.630±0.53 0.379±0.26 1.644±0.68 0.494±0.24 0.060±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006T5 CIL_0006T5_0002 CGP 15:102203648-102231935
CIL_00060L CIL_00060L_0002 CGP 15:102215995-102257517

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003366 IEA cell-matrix adhesion involved in ameboidal cell migration
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0007160 IEA cell-matrix adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0008305 IEA integrin complex
GO:0009986 IEA cell surface
GO:0034113 IEA heterotypic cell-cell adhesion
GO:0034446 IEA substrate adhesion-dependent cell spreading
GO:0034669 IEA integrin alpha4-beta7 complex
GO:0043113 IEA receptor clustering
GO:0043235 ISO receptor complex
GO:0050839 IEA cell adhesion molecule binding
GO:0050900 IMP leukocyte migration
GO:0050901 IEA leukocyte tethering or rolling
GO:0070062 IEA extracellular vesicular exosome
GO:0072678 IMP T cell migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267082 ITGB7-004 protein_coding Homo_sapiens 0 2346
ENST00000416904 ZNF740-002 protein_coding Homo_sapiens 0 283
ENST00000422257 ITGB7-005 protein_coding Homo_sapiens 0 2346
ENST00000548706 ITGB7-009 retained_intron Homo_sapiens 0 483

Loading