C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: steroid receptor RNA activator 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001415 Sra1-201 ENSMUSG00000006050 10090 - 18:36671160-36679366 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastLiverMuscleOvaryPlacentaTestisENSMUST00000001415
Transcript ID Adipose Bladder Brain Breast Liver Muscle Ovary Placenta Testis
ENSMUST00000001415 22.652±0.17 23.649±3.81 19.449±4.26 23.163±0.00 8.067±1.77 9.228±1.23 12.479±0.42 6.486±0.00 8.100±1.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ZN CIL_0006ZN_0002 CGP 18:36664060-36679366
CIL_0006ZI CIL_0006ZI_0002 CGP 18:36666681-36683861

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0015629 IEA actin cytoskeleton
GO:0043066 TAS negative regulation of apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336283 SRA1-001 protein_coding Homo_sapiens 0.00000007 64
ENST00000354402 APBB3-002 protein_coding Homo_sapiens 0 1759
ENST00000356738 APBB3-001 protein_coding Homo_sapiens 0 1781
ENST00000357560 APBB3-003 protein_coding Homo_sapiens 0 1857
ENST00000358580 APBB3-201 protein_coding Homo_sapiens 0 1088
ENST00000412920 APBB3-011 protein_coding Homo_sapiens 0 1690
ENST00000467078 APBB3-004 nonsense_mediated_decay Homo_sapiens 0 1048
ENST00000503850 APBB3-008 retained_intron Homo_sapiens 0 364
ENST00000503979 APBB3-021 retained_intron Homo_sapiens 0 407
ENST00000505617 APBB3-019 processed_transcript Homo_sapiens 0 616
ENST00000506165 APBB3-014 retained_intron Homo_sapiens 0 279
ENST00000506289 APBB3-018 retained_intron Homo_sapiens 0 1016
ENST00000506958 APBB3-017 retained_intron Homo_sapiens 0 512
ENST00000507279 APBB3-024 processed_transcript Homo_sapiens 0 401
ENST00000509914 APBB3-005 nonsense_mediated_decay Homo_sapiens 0 1048
ENST00000510241 APBB3-006 retained_intron Homo_sapiens 0 1038
ENST00000511201 APBB3-012 protein_coding Homo_sapiens 0 1046
ENST00000511463 APBB3-022 retained_intron Homo_sapiens 0 407
ENST00000511896 APBB3-007 nonsense_mediated_decay Homo_sapiens 0 929
ENST00000513507 APBB3-015 retained_intron Homo_sapiens 0 811
ENST00000515056 APBB3-009 retained_intron Homo_sapiens 0 1038

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