C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001451 Smg5-201 ENSMUSG00000001415 10090 + 3:88336260-88362337 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001451
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001451 19.359±2.17 17.373±2.14 17.149±1.90 23.006±2.14 18.346±4.48 20.322±4.49 13.764±0.50 15.091±2.84 15.267±9.33 16.542±1.43 13.306±2.60 27.938±5.14 28.189±14.18 38.842±10.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065
CIL_0008P5 CIL_0008P5_0002 VISTA 3:88218217-88823366
CIL_000898 CIL_000898_0002 VISTA 3:88224783-88827970
CIL_00064M CIL_00064M_0002 CGP 3:88336260-88368541

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0035303 ISS regulation of dephosphorylation
GO:0051721 ISS protein phosphatase 2A binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361813 SMG5-001 protein_coding Homo_sapiens 0 4244
ENST00000468993 SMG5-003 retained_intron Homo_sapiens 2e-21 106
ENST00000473643 SMG5-004 retained_intron Homo_sapiens 0 259
ENST00000489907 SMG5-008 processed_transcript Homo_sapiens 0 318

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