C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: karyopherin (importin) beta 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001479 Kpnb1-001 ENSMUSG00000001440 10090 - 11:97159714-97187881 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001479
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001479 30.980±6.37 7.683±1.95 26.488±4.43 30.249±6.80 17.254±3.78 13.663±2.35 12.834±1.28 12.856±1.06 26.669±21.01 16.543±2.53 12.966±0.70 30.297±5.96 51.633±22.85 20.953±1.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RQ CIL_0007RQ_0002 VISTA 11:96583318-97187851

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005635 IEA nuclear envelope
GO:0005737 IEA cytoplasm
GO:0006606 IDA protein import into nucleus
GO:0006610 IDA ribosomal protein import into nucleus
GO:0008536 IEA Ran GTPase binding
GO:0008565 IDA protein transporter activity
GO:0016020 IEA membrane
GO:0019899 IEA enzyme binding
GO:0019904 IEA protein domain specific binding
GO:0031965 IEA nuclear membrane
GO:0043234 IDA protein complex
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome
GO:0071782 IEA endoplasmic reticulum tubular network

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000149057 kpnb1-001 protein_coding Danio_rerio 0 1851
ENST00000290158 KPNB1-001 protein_coding Homo_sapiens 0 4650
ENST00000535458 KPNB1-002 protein_coding Homo_sapiens 0 3794
ENST00000540627 KPNB1-003 protein_coding Homo_sapiens 0 3843
ENST00000577875 KPNB1-007 protein_coding Homo_sapiens 0 885
ENST00000577918 KPNB1-006 processed_transcript Homo_sapiens 0 1182
ENST00000578718 KPNB1-009 processed_transcript Homo_sapiens 0 586
ENST00000579901 KPNB1-014 processed_transcript Homo_sapiens 0 760
ENST00000580158 KPNB1-012 retained_intron Homo_sapiens 0 627
ENST00000580573 KPNB1-011 retained_intron Homo_sapiens 0 483
ENST00000582097 KPNB1-004 protein_coding Homo_sapiens 0 2507
ENST00000582126 KPNB1-013 nonsense_mediated_decay Homo_sapiens 0 468
ENST00000583013 KPNB1-008 protein_coding Homo_sapiens 0 449
ENST00000583648 KPNB1-005 protein_coding Homo_sapiens 0 782

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