C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000002080 Pdzd4-001 ENSMUSG00000002006 10090 - X:73793359-73824969 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002080
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002080 2.142±1.81 1.297±0.12 4.633±0.07 26.674±13.18 0.804±0.06 0.921±0.29 0.393±0.21 0.275±0.10 0.223±0.10 1.307±0.28 0.207±0.10 2.810±0.99 0.701±0.09 0.249±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001UT CIL_0001UT_0002 CGP X:73787028-73824969
CIL_0001US CIL_0001US_0002 CGP X:73793359-73896105

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000164640 PDZD4-002 protein_coding Homo_sapiens 0 2595
ENST00000393758 PDZD4-201 protein_coding Homo_sapiens 0 2771
ENST00000468491 PDZD4-007 processed_transcript Homo_sapiens 0 387
ENST00000475140 PDZD4-003 processed_transcript Homo_sapiens 0 817
ENST00000480418 PDZD4-001 processed_transcript Homo_sapiens 0 331
ENST00000480650 PDZD4-006 nonsense_mediated_decay Homo_sapiens 0 521
ENST00000483693 PDZD4-004 processed_transcript Homo_sapiens 0 390
ENST00000484792 PDZD4-005 processed_transcript Homo_sapiens 0 545
ENST00000544474 PDZD4-202 protein_coding Homo_sapiens 0 1965

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