C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: REC8 meiotic recombination protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000002395 Rec8-001 ENSMUSG00000002324 10090 + 14:55618037-55625395 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002395
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002395 3.797±3.82 3.585±1.43 0.750±0.23 4.365±0.00 0.337±0.22 0.744±0.19 0.095±0.04 3.535±0.83 1.081±0.69 2.064±0.80 0.050±0.03 2.806±1.08 5.949±3.68 26.714±7.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001CI CIL_0001CI_0002 CGP 14:55603571-55625395
CIL_00028R CIL_00028R_0002 CGP 14:55618037-55637895

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000724 IGI double-strand break repair via homologous recombination
GO:0000778 IDA condensed nuclear chromosome kinetochore
GO:0000780 IDA condensed nuclear chromosome, centromeric region
GO:0000794 IDA condensed nuclear chromosome
GO:0000795 IDA synaptonemal complex
GO:0000800 IDA lateral element
GO:0001556 IMP oocyte maturation
GO:0001673 IDA male germ cell nucleus
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0007059 IEA chromosome segregation
GO:0007126 IPI meiotic nuclear division
GO:0007129 IMP synapsis
GO:0007141 IMP male meiosis I
GO:0007286 IMP spermatid development
GO:0009566 IMP fertilization
GO:0030893 IDA meiotic cohesin complex
GO:0030999 IGI linear element assembly
GO:0034991 IDA nuclear meiotic cohesin complex
GO:0072520 IGI seminiferous tubule development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000559797 REC8-007 non_stop_decay Homo_sapiens 0 355
ENST00000611366 REC8-002 protein_coding Homo_sapiens 0 488
ENST00000619469 REC8-003 retained_intron Homo_sapiens 0 409
ENST00000620473 REC8-001 protein_coding Homo_sapiens 0 488

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