C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH3-domain GRB2-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000003268 Sh3gl1-201 ENSMUSG00000003200 10090 - 17:56016753-56036637 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003268
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003268 32.907±2.90 33.266±7.43 33.287±5.41 35.634±12.75 34.088±11.80 24.043±4.27 8.886±1.84 17.737±3.08 24.446±5.50 29.061±7.88 4.549±0.52 44.978±14.17 56.957±12.79 37.409±8.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QU CIL_0005QU_0003 CGP 17:55997081-56016790
CIL_0005GU CIL_0005GU_0003 CGP 17:56005711-56036637
CIL_00036Q CIL_00036Q_0002 CGP 17:56016753-56068026

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005768 IEA endosome
GO:0006897 IEA endocytosis
GO:0008289 IEA lipid binding
GO:0016020 IEA membrane
GO:0019902 IEA phosphatase binding
GO:0030054 IEA cell junction
GO:0042802 IEA identical protein binding
GO:0042995 IEA cell projection
GO:0051020 IEA GTPase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269886 SH3GL1-001 protein_coding Homo_sapiens 0 1362
ENST00000393544 ATF4P4-002 processed_transcript Homo_sapiens 0 638
ENST00000417295 SH3GL1-002 protein_coding Homo_sapiens 0 935
ENST00000544730 RP11-667M19.5-001 processed_pseudogene Homo_sapiens 0 638
ENST00000579186 SH3GL1P1-003 processed_transcript Homo_sapiens 0 593
ENST00000582245 SH3GL1P2-001 processed_pseudogene Homo_sapiens 0 896
ENST00000583601 SH3GL1P1-001 transcribed_processed_pseudogene Homo_sapiens 0 937
ENST00000590010 SH3GL1P3-001 processed_pseudogene Homo_sapiens 0 843
ENST00000593591 SH3GL1-004 protein_coding Homo_sapiens 0 566
ENST00000598230 SH3GL1-006 protein_coding Homo_sapiens 0 516
ENST00000598564 SH3GL1-003 protein_coding Homo_sapiens 0 808

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