C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAN binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000003310 Ranbp2-201 ENSMUSG00000003226 10090 + 10:58446852-58494155 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003310
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003310 3.041±0.10 4.498±2.00 4.449±0.00 6.538±5.79 3.303±1.55 3.276±0.37 1.503±0.48 3.618±0.45 4.143±2.34 4.415±1.68 1.662±0.75 7.233±4.78 15.378±8.91 3.238±1.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RA CIL_0007RA_0002 VISTA 10:58082278-58683620
CIL_00010W CIL_00010W_0002 CGP 10:58323466-58494155
CIL_00047P CIL_00047P_0002 CGP 10:58446852-58576242

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000413 IEA protein peptidyl-prolyl isomerization
GO:0003723 IEA RNA binding
GO:0003755 IEA peptidyl-prolyl cis-trans isomerase activity
GO:0005515 IPI protein binding
GO:0005643 IEA nuclear pore
GO:0005739 IDA mitochondrion
GO:0006457 IEA protein folding
GO:0008270 IEA zinc ion binding
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016874 IEA ligase activity
GO:0016925 ISS protein sumoylation
GO:0031965 ISS nuclear membrane
GO:0033132 IDA negative regulation of glucokinase activity
GO:0042405 ISS nuclear inclusion body
GO:0044615 ISS nuclear pore nuclear basket
GO:0046907 IEA intracellular transport
GO:0051028 IEA mRNA transport
GO:0090526 IMP regulation of gluconeogenesis involved in cellular glucose homeostasis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000016946 RGPD5-001 protein_coding Homo_sapiens 0 3219
ENST00000272454 RGPD5-201 protein_coding Homo_sapiens 0 3072
ENST00000283195 RANBP2-001 protein_coding Homo_sapiens 0 5267
ENST00000302558 RGPD8-006 protein_coding Homo_sapiens 0 3230
ENST00000304514 RGPD3-201 protein_coding Homo_sapiens 0 3230
ENST00000329516 RGPD6-001 protein_coding Homo_sapiens 0 3219
ENST00000330331 RGPD6-012 protein_coding Homo_sapiens 0 3072
ENST00000330575 RGPD8-007 protein_coding Homo_sapiens 0 3083
ENST00000393283 RGPD5-002 protein_coding Homo_sapiens 0 3072
ENST00000398146 RGPD2-001 protein_coding Homo_sapiens 0 3138
ENST00000398193 RGPD1-201 protein_coding Homo_sapiens 0 3144
ENST00000408999 RGPD4-001 protein_coding Homo_sapiens 0 3293
ENST00000409750 RGPD8-001 protein_coding Homo_sapiens 0 2479
ENST00000409776 RGPD1-202 protein_coding Homo_sapiens 0 3040
ENST00000409886 RGPD3-002 protein_coding Homo_sapiens 0 3326
ENST00000413468 RGPD5-004 nonsense_mediated_decay Homo_sapiens 0 1655
ENST00000425282 RANBP2-011 nonsense_mediated_decay Homo_sapiens 0 272
ENST00000428128 RGPD1-003 nonsense_mediated_decay Homo_sapiens 0 2518
ENST00000430736 RGPD5-008 protein_coding Homo_sapiens 0 556
ENST00000432606 RGPD5-010 protein_coding Homo_sapiens 0 235
ENST00000437167 RGPD6-008 protein_coding Homo_sapiens 0 560
ENST00000441344 RGPD5-009 protein_coding Homo_sapiens 0 518
ENST00000446930 RGPD6-004 protein_coding Homo_sapiens 0 562
ENST00000455695 RGPD6-009 protein_coding Homo_sapiens 0 235
ENST00000459645 RGPD6-010 retained_intron Homo_sapiens 0 235
ENST00000471422 RGPD8-005 retained_intron Homo_sapiens 0 313
ENST00000472794 RGPD5-014 retained_intron Homo_sapiens 0 313
ENST00000480894 RGPD6-007 retained_intron Homo_sapiens 0 313
ENST00000482778 RGPD5-011 retained_intron Homo_sapiens 0 353
ENST00000484024 RGPD6-003 nonsense_mediated_decay Homo_sapiens 0 1655
ENST00000490990 RGPD6-005 processed_transcript Homo_sapiens 0 518
ENST00000493394 RGPD5-013 retained_intron Homo_sapiens 0 427
ENST00000494592 RGPD2-004 processed_transcript Homo_sapiens 0 571
ENST00000495473 RGPD5-012 retained_intron Homo_sapiens 0 235
ENST00000495924 RANBP2-009 retained_intron Homo_sapiens 0 324
ENST00000496537 RGPD8-003 protein_coding Homo_sapiens 0 518
ENST00000522286 RGPD8-008 nonsense_mediated_decay Homo_sapiens 0 1661
ENST00000559485 RGPD1-001 protein_coding Homo_sapiens 0 3040

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