C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho family GTPase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000003451 Rnd1-001 ENSMUSG00000054855 10090 - 15:98669205-98677461 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003451
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003451 1.076±0.11 0.771±0.35 0.634±0.09 3.418±1.78 0.795±0.39 0.423±0.23 0.409±0.11 0.596±0.15 1.985±1.91 4.868±0.22 0.893±0.25 0.409±0.21 0.520±0.39 0.086±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000F CIL_00000F_0002 CGP 15:98645134-98677461

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 IEA receptor binding
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005829 TAS cytosol
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0005912 IEA adherens junction
GO:0007015 IEA actin filament organization
GO:0007162 IEA negative regulation of cell adhesion
GO:0007264 IEA small GTPase mediated signal transduction
GO:0016322 IEA neuron remodeling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309739 RND1-001 protein_coding Homo_sapiens 0 1450
ENST00000548445 RND1-002 retained_intron Homo_sapiens 0 861
ENST00000550607 RND1-005 protein_coding Homo_sapiens 0 488
ENST00000551243 RND1-003 nonsense_mediated_decay Homo_sapiens 0 398

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