C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004OP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000000551-ENSDARG00000055530 CGP 7955 13:24655104-24748435
GeneTranscriptPositionBiotype
ENSDARG00000000551 (slc1a4)
solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 		ENSDART00000043004 (slc1a4-001) 24655879-24671222 protein_coding
ENSDART00000057584 (slc1a4-201) 24655104-24671222 protein_coding
ENSDART00000127741 (slc1a4-202) 24655110-24671375 protein_coding
ENSDARG00000055530 (sertad2b)
SERTA domain containing 2b 		ENSDART00000077899 (sertad2b-001) 24724853-24748435 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0004OP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020142-ENSMUSG00000049800 CGP 10090 11:20302180-20653021
GeneTranscriptPositionBiotype
ENSMUSG00000020142 (Slc1a4)
solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 		ENSMUST00000004634 (Slc1a4-001) 20302205-20332684 protein_coding
ENSMUST00000109594 (Slc1a4-201) 20302180-20332713 protein_coding
ENSMUSG00000049800 (Sertad2)
SERTA domain containing 2 		ENSMUST00000093292 (Sertad2-001) 20543334-20653021 protein_coding
ENSMUST00000109585 (Sertad2-002) 20647155-20649065 protein_coding
ENSMUST00000109586 (Sertad2-003) 20631979-20653021 protein_coding
ENSMUST00000145328 (Sertad2-004) 20543253-20597020 processed_transcript
ENSMUSG00000078965 (Gm12033)
predicted gene 12033 		ENSMUST00000180654 (Gm12033-001) 20335012-20336013 processed_pseudogene
ENSMUSG00000083555 (Gm12035)
predicted gene 12035 		ENSMUST00000121890 (Gm12035-001) 20574567-20575189 processed_pseudogene
ENSMUSG00000083878 (Gm12034)
predicted gene 12034 		ENSMUST00000119032 (Gm12034-001) 20446412-20446810 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004OP_0001ENSDARG00000000551ENSDART00000043004ENSDART00000057584ENSDART00000127741ENSDARG00000055530ENSDART00000077899CIL_0004OP_0002ENSMUSG00000020142ENSMUST00000004634ENSMUST00000109594ENSMUSG00000049800ENSMUST00000093292ENSMUST00000109585ENSMUST00000109586ENSMUST00000145328ENSMUSG00000078965ENSMUST00000180654ENSMUSG00000083555ENSMUST00000121890ENSMUSG00000083878ENSMUST00000119032
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004OP_0001ENSDARG00000000551ENSDART00000043004ENSDART00000057584ENSDART00000127741ENSDARG00000055530ENSDART00000077899CIL_0004OP_0002ENSMUSG00000020142ENSMUST00000004634ENSMUST00000109594ENSMUSG00000049800ENSMUST00000093292ENSMUST00000109585ENSMUST00000109586ENSMUST00000145328ENSMUSG00000078965ENSMUST00000180654ENSMUSG00000083555ENSMUST00000121890ENSMUSG00000083878ENSMUST00000119032
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000000551 ENSDART00000043004 N/A N/A N/A N/A N/A N/A N/A N/A 0.075±0.00 N/A N/A N/A N/A N/A
ENSDART00000057584 N/A N/A N/A 27.539±5.86 N/A N/A 1.020±0.51 0.558±0.00 N/A N/A 2.427±0.00 N/A N/A N/A
ENSDART00000127741 N/A N/A N/A 9.066±0.35 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000055530 ENSDART00000077899 N/A N/A N/A 9.528±2.70 N/A N/A 1.640±0.80 1.610±0.20 0.331±0.00 N/A 3.287±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020142 ENSMUST00000004634 1.353±0.60 2.717±0.37 0.802±0.00 8.982±0.00 0.851±0.38 5.035±1.64 0.591±0.13 1.779±0.34 1.814±0.55 4.353±0.77 0.189±0.06 2.356±1.15 10.933±16.71 0.310±0.07
ENSMUST00000109594 1.529±0.49 0.779±0.10 1.261±0.18 7.331±3.86 0.878±0.11 2.502±1.45 0.395±0.01 2.330±1.04 3.813±2.80 2.517±1.29 N/A 1.815±0.49 1.252±0.38 N/A
ENSMUSG00000049800 ENSMUST00000093292 N/A N/A 0.766±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.174±0.73 6.289±1.19
ENSMUST00000109585 N/A N/A N/A N/A 3.140±0.20 5.840±0.00 N/A 3.942±0.00 N/A N/A N/A 3.681±0.00 N/A 25.185±7.58
ENSMUST00000109586 5.898±1.75 5.286±0.28 5.413±0.39 2.446±1.24 6.975±1.81 12.512±2.23 5.372±0.19 8.318±0.38 6.646±3.30 15.945±1.38 2.725±0.33 8.899±3.19 4.590±2.12 8.748±4.86
ENSMUST00000145328 N/A 2.592±0.33 N/A N/A 4.862±1.03 5.863±0.88 N/A 5.009±0.00 N/A 12.302±0.00 N/A 10.163±1.64 N/A N/A
ENSMUSG00000078965 ENSMUST00000180654 0.386±0.21 0.319±0.11 13.566±13.47 33.991±9.76 0.194±0.17 0.203±0.05 0.465±0.31 0.307±0.34 10.845±21.44 0.059±0.02 0.239±0.11 0.248±0.14 0.127±0.02 0.739±0.24
ENSMUSG00000083555 ENSMUST00000121890 0.087±0.00 N/A N/A 0.063±0.00 N/A N/A N/A 0.134±0.06 0.079±0.05 N/A N/A 0.318±0.00 0.171±0.00 0.183±0.02
ENSMUSG00000083878 ENSMUST00000119032 0.154±0.02 0.291±0.00 0.369±0.27 0.262±0.15 0.273±0.08 0.254±0.00 N/A 0.385±0.16 0.273±0.29 0.398±0.06 0.208±0.11 0.330±0.20 0.314±0.26 2.989±2.03

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