C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATPase, H+/K+ exchanging, gastric, alpha polypeptide
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005692 Atp4a-002 ENSMUSG00000005553 10090 + 7:30712209-30725535 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastKidneyLiverOvaryPlacentaTestisENSMUST00000005692
Transcript ID Adipose Adrenal Breast Kidney Liver Ovary Placenta Testis
ENSMUST00000005692 0.008±0.00 0.946±0.01 0.055±0.00 6.826±0.60 0.243±0.19 0.188±0.12 0.015±0.00 0.398±0.11

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IEA magnesium ion binding
GO:0005524 IEA ATP binding
GO:0005615 IEA extracellular space
GO:0005886 IDA plasma membrane
GO:0006754 IEA ATP biosynthetic process
GO:0008900 IDA hydrogen:potassium-exchanging ATPase activity
GO:0010155 IDA regulation of proton transport
GO:0015991 IEA ATP hydrolysis coupled proton transport
GO:0016021 IEA integral component of membrane
GO:0042493 IMP response to drug
GO:0045851 IDA pH reduction
GO:0046982 IPI protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000104950 atp1a3a-001 protein_coding Danio_rerio 0 296
ENSDART00000005086 atp1a1b-001 protein_coding Danio_rerio 0 289
ENSDART00000049437 cdc42bpb-001 protein_coding Danio_rerio 0.0001 55
ENST00000262623 ATP4A-001 protein_coding Homo_sapiens 0 3825
ENST00000368081 ATP1A4-001 protein_coding Homo_sapiens 0 302
ENST00000418334 ATP1A4-002 processed_transcript Homo_sapiens 0 302
ENST00000469023 ATP1A4-003 retained_intron Homo_sapiens 0 302
ENST00000477338 ATP1A4-004 nonsense_mediated_decay Homo_sapiens 0 302
ENST00000592131 ATP4A-002 retained_intron Homo_sapiens 0 942

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