C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Eph receptor B3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000006112 Ephb3-001 ENSMUSG00000005958 10090 + 16:21204755-21223304 protein_coding

Mus musculus EnsemblGRCm38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006112
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006112 6.724±4.30 0.834±0.39 9.450±1.17 5.837±2.22 6.674±3.14 16.915±1.69 3.802±0.23 2.360±0.26 0.254±0.19 19.606±0.45 0.177±0.08 5.254±2.24 1.544±0.59 0.254±0.12

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IMP angiogenesis
GO:0001655 IMP urogenital system development
GO:0005003 ISS ephrin receptor activity
GO:0005005 TAS transmembrane-ephrin receptor activity
GO:0005524 IEA ATP binding
GO:0005887 ISS integral component of plasma membrane
GO:0007411 IMP axon guidance
GO:0007413 IMP axonal fasciculation
GO:0008046 IDA axon guidance receptor activity
GO:0016477 IMP cell migration
GO:0018108 IEA peptidyl-tyrosine phosphorylation
GO:0021952 IDA central nervous system projection neuron axonogenesis
GO:0022038 IMP corpus callosum development
GO:0022407 ISS regulation of cell-cell adhesion
GO:0031290 IDA retinal ganglion cell axon guidance
GO:0032314 ISS regulation of Rac GTPase activity
GO:0034446 ISS substrate adhesion-dependent cell spreading
GO:0042995 IEA cell projection
GO:0043088 ISS regulation of Cdc42 GTPase activity
GO:0046777 ISS protein autophosphorylation
GO:0048013 ISS ephrin receptor signaling pathway
GO:0048538 IMP thymus development
GO:0048546 IMP digestive tract morphogenesis
GO:0050770 IDA regulation of axonogenesis
GO:0051965 IMP positive regulation of synapse assembly
GO:0060021 IMP palate development
GO:0060996 IMP dendritic spine development
GO:0060997 IMP dendritic spine morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000050395 EPHB3 (2 of 2)-201 protein_coding Danio_rerio 0 843
ENST00000330394 EPHB3-001 protein_coding Homo_sapiens 0 4187
ENST00000473079 EPHB3-003 retained_intron Homo_sapiens 0 536

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