C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: EPH receptor B3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000330394 EPHB3-001 ENSG00000182580 9606 + 3:184561784-184582409 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000330394
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000330394 0.377±0.00 0.433±0.00 0.181±0.00 0.417±0.18 3.518±2.43 1.489±0.00 0.132±0.05 0.448±0.33 0.224±0.08 1.316±0.95 0.035±0.01 9.712±4.13 5.736±2.48 1.409±0.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005G3 CIL_0005G3_0001 CGP 3:184135038-184684758

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 ISS angiogenesis
GO:0001655 ISS urogenital system development
GO:0004672 IEA protein kinase activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005003 IDA:IEA ephrin receptor activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005887 IDA:IEA integral component of plasma membrane
GO:0006468 IEA protein phosphorylation
GO:0007169 IEA transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007411 ISS axon guidance
GO:0007413 ISS axonal fasciculation
GO:0008046 IEA axon guidance receptor activity
GO:0016477 IDA cell migration
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0018108 IEA peptidyl-tyrosine phosphorylation
GO:0021952 IEA central nervous system projection neuron axonogenesis
GO:0022038 ISS corpus callosum development
GO:0022407 IDA regulation of cell-cell adhesion
GO:0031290 IEA retinal ganglion cell axon guidance
GO:0032314 IDA regulation of Rac GTPase activity
GO:0034446 IDA substrate adhesion-dependent cell spreading
GO:0042995 IEA cell projection
GO:0043088 IDA regulation of Cdc42 GTPase activity
GO:0046777 IDA protein autophosphorylation
GO:0048013 IDA:IEA ephrin receptor signaling pathway
GO:0048538 ISS thymus development
GO:0048546 ISS digestive tract morphogenesis
GO:0050770 ISS regulation of axonogenesis
GO:0051965 ISS positive regulation of synapse assembly
GO:0060021 ISS palate development
GO:0060996 ISS dendritic spine development
GO:0060997 ISS dendritic spine morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006112 Ephb3-001 protein_coding Mus_musculus 0 4187
ENSMUST00000161063 Ephb3-002 nonsense_mediated_decay Mus_musculus 0 3145
ENSMUST00000159575 Ephb3-003 retained_intron Mus_musculus 0 1919
ENSMUST00000105846 Ephb2-003 protein_coding Mus_musculus 0 1096
ENSMUST00000105845 Ephb2-001 protein_coding Mus_musculus 0 1088
ENSMUST00000160053 Ephb3-004 retained_intron Mus_musculus 0 425
ENSMUST00000059287 Ephb2-002 protein_coding Mus_musculus 0 344
ENSMUST00000144573 Ephb2-005 retained_intron Mus_musculus 0 259

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