C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mitochondrial ribosomal protein L49
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000007482 Mrpl49-201 ENSMUSG00000007338 10090 - 19:6053630-6057751 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000007482
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000007482 22.225±4.26 16.279±0.60 22.244±1.73 15.878±4.45 14.441±0.00 13.312±1.24 22.771±0.99 27.405±14.38 10.043±0.88 11.142±0.72 20.989±2.43 27.186±7.38 8.390±2.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W1 CIL_0008W1_0002 VISTA 19:5510095-6112698
CIL_0002MM CIL_0002MM_0002 CGP 19:6046576-6057751
CIL_0001YU CIL_0001YU_0002 CGP 19:6053630-6059524

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IEA protein binding
GO:0005739 IDA mitochondrion
GO:0005761 ISS mitochondrial ribosome
GO:0006412 IEA translation
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000279242 MRPL49-001 protein_coding Homo_sapiens 1e-29 135
ENST00000294256 SYVN1-002 protein_coding Homo_sapiens 2e-28 132
ENST00000307289 SYVN1-011 protein_coding Homo_sapiens 2e-28 132
ENST00000377190 SYVN1-001 protein_coding Homo_sapiens 2e-28 132
ENST00000449943 SYVN1-003 retained_intron Homo_sapiens 4e-28 132
ENST00000505951 MRPL49P1-001 processed_pseudogene Homo_sapiens 4e-39 165
ENST00000524482 MRPL49-002 processed_transcript Homo_sapiens 8e-27 126
ENST00000526060 SYVN1-004 protein_coding Homo_sapiens 3e-28 132
ENST00000526319 MRPL49-004 nonsense_mediated_decay Homo_sapiens 1e-29 135
ENST00000532671 MRPL49-003 retained_intron Homo_sapiens 2e-29 135

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