C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Terf1 (TRF1)-interacting nuclear factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000007733 Tinf2-201 ENSMUSG00000007589 10090 - 14:55679083-55681817 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000007733
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000007733 5.710±0.43 5.381±1.41 8.765±0.53 5.812±2.04 5.680±1.07 5.389±1.06 2.783±0.46 4.422±0.51 8.192±5.36 6.443±0.43 6.518±0.81 6.149±2.74 17.270±7.10 14.033±3.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SA CIL_0001SA_0002 CGP 14:55672235-55681817
CIL_0001SE CIL_0001SE_0002 CGP 14:55679083-55713492

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000781 IDA chromosome, telomeric region
GO:0000783 IEA nuclear telomere cap complex
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0010370 IEA perinucleolar chromocenter
GO:0010833 IEA telomere maintenance via telomere lengthening
GO:0010836 IEA negative regulation of protein ADP-ribosylation
GO:0032202 IEA telomere assembly
GO:0032205 IDA negative regulation of telomere maintenance
GO:0032206 IEA positive regulation of telomere maintenance
GO:0032211 IEA negative regulation of telomere maintenance via telomerase
GO:0034502 IEA protein localization to chromosome
GO:0042162 IEA telomeric DNA binding
GO:0050680 IEA negative regulation of epithelial cell proliferation
GO:0070198 IEA protein localization to chromosome, telomeric region

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267415 TINF2-001 protein_coding Homo_sapiens 0 521
ENST00000399423 TINF2-002 protein_coding Homo_sapiens 0 429
ENST00000558566 TINF2-004 protein_coding Homo_sapiens 0 222
ENST00000559147 TINF2-012 retained_intron Homo_sapiens 0 279
ENST00000559969 TINF2-005 protein_coding Homo_sapiens 0 385

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