C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A0
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000007980 Hnrnpa0-201 ENSMUSG00000007836 10090 - 13:58125879-58128556 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000007980
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000007980 50.886±28.78 108.793±28.25 45.972±10.66 130.670±89.46 54.852±32.91 72.595±5.38 15.446±1.99 33.631±4.67 44.409±24.98 50.305±7.60 10.230±0.87 127.645±54.23 35.358±20.09 27.321±12.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005OY CIL_0005OY_0002 CGP 13:58004221-58128556

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005634 IEA nucleus
GO:0006954 IDA inflammatory response
GO:0017091 IDA AU-rich element binding
GO:0019901 IEA protein kinase binding
GO:0030529 IEA ribonucleoprotein complex
GO:0032496 IDA response to lipopolysaccharide
GO:0044822 IEA poly(A) RNA binding
GO:0070935 IDA 3'-UTR-mediated mRNA stabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000122660 hnrnpa0a-001 protein_coding Danio_rerio 6.02558e-44 183
ENST00000314940 HNRNPA0-001 protein_coding Homo_sapiens 0 1053

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