C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A0
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000314940 HNRNPA0-001 ENSG00000177733 9606 - 5:137750427-137754376 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000314940
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000314940 29.375±0.00 28.608±0.00 4.942±0.00 13.340±5.08 13.428±6.00 13.799±3.80 6.272±3.64 9.411±4.47 8.066±0.96 17.578±9.61 8.746±2.24 26.661±14.84 31.024±6.45 20.249±4.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005OY CIL_0005OY_0001 CGP 5:137617500-137754376

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0005634 TAS nucleus
GO:0005654 TAS nucleoplasm
GO:0006397 TAS mRNA processing
GO:0006954 ISS inflammatory response
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0017091 IDA AU-rich element binding
GO:0019901 IPI protein kinase binding
GO:0030529 IEA ribonucleoprotein complex
GO:0032496 ISS response to lipopolysaccharide
GO:0044822 IDA poly(A) RNA binding
GO:0070935 ISS 3'-UTR-mediated mRNA stabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000007980 Hnrnpa0-201 protein_coding Mus_musculus 0 1053

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