C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired-like homeobox 2a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000008090 Phox2a-001 ENSMUSG00000007946 10090 + 7:101818313-101822726 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalENSMUST00000008090
Transcript ID Adrenal
ENSMUST00000008090 13.204±3.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XL CIL_0008XL_0002 VISTA 7:101413526-102014552
CIL_000300 CIL_000300_0002 CGP 7:101818313-101838076

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003357 IMP noradrenergic neuron differentiation
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0021523 IMP somatic motor neuron differentiation
GO:0021623 IMP oculomotor nerve formation
GO:0021642 IMP trochlear nerve formation
GO:0021703 IMP locus ceruleus development
GO:0030901 IMP midbrain development
GO:0043576 IMP regulation of respiratory gaseous exchange
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048485 IMP sympathetic nervous system development
GO:0048486 IMP parasympathetic nervous system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000226382 PHOX2B-001 protein_coding Homo_sapiens 0 248
ENST00000298229 INPPL1-001 protein_coding Homo_sapiens 0.00009 55
ENST00000298231 PHOX2A-001 protein_coding Homo_sapiens 0 1356
ENST00000510424 PHOX2B-002 processed_transcript Homo_sapiens 0 241
ENST00000535985 INPPL1-012 nonsense_mediated_decay Homo_sapiens 0.000006 55
ENST00000538751 INPPL1-002 protein_coding Homo_sapiens 0.00008 55
ENST00000541756 INPPL1-201 protein_coding Homo_sapiens 0.00008 55
ENST00000544057 PHOX2A-003 processed_transcript Homo_sapiens 0 669
ENST00000546310 PHOX2A-002 protein_coding Homo_sapiens 0 237

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