C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: v-ral simian leukemia viral oncogene homolog A (ras related)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000009003 Rala-001 ENSMUSG00000008859 10090 - 13:17880575-17944239 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000009003
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000009003 10.357±0.99 40.961±4.95 13.360±0.54 22.587±6.14 10.111±4.80 12.439±5.44 6.616±0.37 9.263±0.77 5.393±0.95 16.069±1.37 8.412±0.37 14.658±3.35 16.427±5.28 7.610±1.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000LG CIL_0000LG_0002 CGP 13:17715962-17944239

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000910 ISS cytokinesis
GO:0003924 IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005886 ISS plasma membrane
GO:0005925 IEA focal adhesion
GO:0006184 IEA GTP catabolic process
GO:0006887 IEA exocytosis
GO:0007265 IEA Ras protein signal transduction
GO:0009986 IEA cell surface
GO:0017157 IDA regulation of exocytosis
GO:0030139 IEA endocytic vesicle
GO:0030659 TAS cytoplasmic vesicle membrane
GO:0031532 IEA actin cytoskeleton reorganization
GO:0031755 ISS Edg-2 lysophosphatidic acid receptor binding
GO:0032154 ISS cleavage furrow
GO:0051491 IEA positive regulation of filopodium assembly
GO:0051665 IDA membrane raft localization
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000005257 RALA-001 protein_coding Homo_sapiens 0 1666
ENST00000434466 RALA-002 nonsense_mediated_decay Homo_sapiens 0 664
ENST00000436179 RALA-003 protein_coding Homo_sapiens 0 425
ENST00000447806 AC002486.2-001 processed_pseudogene Homo_sapiens 0 575
ENST00000466491 RALA-005 processed_transcript Homo_sapiens 0 289
ENST00000468201 RALA-004 processed_transcript Homo_sapiens 0 678
ENST00000546724 RP11-123M21.2-001 processed_pseudogene Homo_sapiens 0 641

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