C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclin-dependent kinase 9 (CDC2-related kinase)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000009699 Cdk9-001 ENSMUSG00000009555 10090 - 2:32707438-32712784 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000009699
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000009699 11.310±3.08 27.165±10.92 45.608±4.27 52.354±33.04 26.603±6.41 18.476±4.91 5.824±0.79 15.324±2.41 25.571±15.89 22.518±6.96 10.154±2.02 22.428±9.22 24.605±11.55 13.839±5.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YA CIL_0008YA_0002 VISTA 2:32608279-33209524
CIL_0000H9 CIL_0000H9_0002 CGP 2:32682609-32713076

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 ISO DNA binding
GO:0003682 IDA chromatin binding
GO:0004693 IEA cyclin-dependent protein serine/threonine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006281 IEA DNA repair
GO:0006282 IEA regulation of DNA repair
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006468 ISO protein phosphorylation
GO:0008023 ISS transcription elongation factor complex
GO:0008024 IDA:ISS positive transcription elongation factor complex b
GO:0008353 IEA RNA polymerase II carboxy-terminal domain kinase activity
GO:0016020 IEA membrane
GO:0016605 IEA PML body
GO:0017069 IDA snRNA binding
GO:0031056 IEA regulation of histone modification
GO:0043111 IEA replication fork arrest
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044212 IDA transcription regulatory region DNA binding
GO:0071157 IEA negative regulation of cell cycle arrest
GO:0071345 IEA cellular response to cytokine stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373264 CDK9-001 protein_coding Homo_sapiens 0 1480
ENST00000421939 CDK9-005 protein_coding Homo_sapiens 0 374
ENST00000491521 CDK9-003 processed_transcript Homo_sapiens 0 651
ENST00000498339 CDK9-004 processed_transcript Homo_sapiens 0 435

Loading