C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000011302 Brf1-201 ENSMUSG00000011158 10090 - 12:112959862-113000621 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000011302
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000011302 7.862±1.59 4.903±0.45 10.336±3.20 14.405±0.42 6.537±0.23 4.640±0.38 3.047±0.09 4.542±1.50 7.665±5.46 6.500±0.53 4.850±1.89 19.072±9.32 12.649±8.43 21.336±15.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001KK CIL_0001KK_0002 CGP 12:112934733-113000621
CIL_0005IK CIL_0005IK_0004 CGP 12:112959862-113000621

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000126 IEA transcription factor TFIIIB complex
GO:0003674 ND molecular_function
GO:0003743 IEA translation initiation factor activity
GO:0005575 ND cellular_component
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006384 IEA transcription initiation from RNA polymerase III promoter
GO:0006413 IEA translational initiation
GO:0008270 IEA zinc ion binding
GO:0017025 IEA TBP-class protein binding
GO:0043488 IMP regulation of mRNA stability

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000327359 BRF1-009 protein_coding Homo_sapiens 0 1633
ENST00000379937 BRF1-010 protein_coding Homo_sapiens 0 1555
ENST00000392557 BRF1-001 protein_coding Homo_sapiens 0 1264
ENST00000440513 BRF1-008 protein_coding Homo_sapiens 0 1164
ENST00000446501 BRF1-011 protein_coding Homo_sapiens 0 1105
ENST00000546417 BRF1-016 protein_coding Homo_sapiens 0 520
ENST00000546474 BRF1-002 protein_coding Homo_sapiens 0 1929
ENST00000547562 BRF1-023 protein_coding Homo_sapiens 0 828
ENST00000548421 BRF1-012 protein_coding Homo_sapiens 0 621
ENST00000549655 BRF1-018 protein_coding Homo_sapiens 0 717
ENST00000551787 BRF1-007 protein_coding Homo_sapiens 0 544
ENST00000552127 BRF1-017 protein_coding Homo_sapiens 0 571
ENST00000619151 BRF1-202 protein_coding Homo_sapiens 0 1203

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