C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: insulin-like growth factor 2 mRNA binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000013559 Igf2bp1-001 ENSMUSG00000013415 10090 - 11:95957163-96005940 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000013559
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000013559 0.016±0.01 0.025±0.01 0.151±0.02 4.352±0.06 0.018±0.01 0.142±0.04 0.007±0.00 2.596±1.97 0.074±0.02 0.011±0.00 0.026±0.01 15.711±8.23 0.371±0.08

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003729 ISS mRNA binding
GO:0003730 ISS mRNA 3'-UTR binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006403 IEA RNA localization
GO:0010494 ISS cytoplasmic stress granule
GO:0010610 ISS regulation of mRNA stability involved in response to stress
GO:0017148 IEA negative regulation of translation
GO:0030425 IEA dendrite
GO:0030529 ISS ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding
GO:0045182 IEA translation regulator activity
GO:0048027 IEA mRNA 5'-UTR binding
GO:0051028 IEA mRNA transport
GO:0070934 IEA CRD-mediated mRNA stabilization
GO:0070937 ISS CRD-mediated mRNA stability complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290341 IGF2BP1-001 protein_coding Homo_sapiens 0 2579
ENST00000431824 IGF2BP1-002 protein_coding Homo_sapiens 0 1144
ENST00000505562 IGF2BP1-006 retained_intron Homo_sapiens 0 455
ENST00000510023 IGF2BP1-003 processed_transcript Homo_sapiens 0 601
ENST00000515586 IGF2BP1-004 processed_transcript Homo_sapiens 0 532

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