C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: E2F transcription factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000015003 E2f4-201 ENSMUSG00000014859 10090 + 8:105297663-105305369 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000015003
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000015003 37.865±6.82 39.922±2.63 26.188±5.12 29.076±10.69 43.292±15.25 46.174±6.67 18.215±2.69 30.901±2.17 96.411±92.55 43.727±1.71 12.939±1.04 53.914±19.98 41.278±6.85 14.825±6.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SV CIL_0005SV_0002 CGP 8:105289924-105305369
CIL_0003M2 CIL_0003M2_0003 CGP 8:105297663-105310623

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000083 IDA regulation of transcription involved in G1/S transition of mitotic cell cycle
GO:0002064 IMP epithelial cell development
GO:0003677 IDA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 TAS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006884 IMP cell volume homeostasis
GO:0008015 IMP blood circulation
GO:0008134 IEA transcription factor binding
GO:0008361 IMP regulation of cell size
GO:0009887 IMP organ morphogenesis
GO:0019904 IEA protein domain specific binding
GO:0042127 IDA regulation of cell proliferation
GO:0042384 IMP cilium assembly
GO:0044458 ISS motile cilium assembly
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0051726 TAS regulation of cell cycle
GO:0098534 ISS centriole assembly
GO:1903251 ISS multi-ciliated epithelial cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000379378 E2F4-001 protein_coding Homo_sapiens 0 1578
ENST00000561904 E2F4-013 retained_intron Homo_sapiens 0 617
ENST00000563238 E2F4-007 retained_intron Homo_sapiens 0 586
ENST00000564718 E2F4-011 processed_transcript Homo_sapiens 0 654
ENST00000565226 E2F4-005 protein_coding Homo_sapiens 0 318
ENST00000565849 E2F4-010 nonsense_mediated_decay Homo_sapiens 0 527
ENST00000567007 E2F4-002 retained_intron Homo_sapiens 0 1160
ENST00000567228 E2F4-004 retained_intron Homo_sapiens 0 313
ENST00000568485 E2F4-009 retained_intron Homo_sapiens 0 411
ENST00000568693 E2F4-003 retained_intron Homo_sapiens 0 220
ENST00000568839 E2F4-006 nonsense_mediated_decay Homo_sapiens 0 610
ENST00000569573 E2F4-008 nonsense_mediated_decay Homo_sapiens 0 542

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