C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM-domain containing, protein kinase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000015137 Limk1-001 ENSMUSG00000029674 10090 - 5:134656039-134688590 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000015137
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000015137 4.650±1.44 9.237±4.76 3.766±0.08 19.023±1.79 2.747±1.30 1.282±0.46 1.109±0.22 1.373±0.41 0.605±0.35 4.969±0.36 0.401±0.18 3.370±1.43 20.852±11.38 6.240±2.35

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005925 IDA focal adhesion
GO:0006468 ISS protein phosphorylation
GO:0008270 IEA zinc ion binding
GO:0031072 IEA heat shock protein binding
GO:0032233 IEA positive regulation of actin filament bundle assembly
GO:0043005 IDA neuron projection
GO:0045773 IGI positive regulation of axon extension
GO:0046982 IPI protein heterodimerization activity
GO:0051444 IEA negative regulation of ubiquitin-protein transferase activity
GO:0051496 IGI positive regulation of stress fiber assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336180 LIMK1-001 protein_coding Homo_sapiens 0 2346
ENST00000418310 LIMK1-002 protein_coding Homo_sapiens 0 2213
ENST00000435201 LIMK1-003 nonsense_mediated_decay Homo_sapiens 0 1164
ENST00000483414 LIMK1-004 retained_intron Homo_sapiens 0 1140
ENST00000486361 LIMK1-006 processed_transcript Homo_sapiens 0 313
ENST00000491052 LIMK1-007 processed_transcript Homo_sapiens 0 566
ENST00000538333 LIMK1-005 protein_coding Homo_sapiens 0 2069

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