C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: laminin, alpha 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000015791 Lama5-001 ENSMUSG00000015647 10090 - 2:180176373-180225859 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000015791
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000015791 13.303±4.45 10.870±1.97 20.712±3.07 1.169±0.13 23.010±11.12 11.229±1.88 13.726±1.03 12.630±3.61 0.527±0.27 34.726±3.06 3.049±0.81 17.305±6.73 41.823±17.43 1.319±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000691 CIL_000691_0003 CGP 2:180171485-180225859
CIL_0001DP CIL_0001DP_0002 CGP 2:180176373-180258445

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001658 IMP branching involved in ureteric bud morphogenesis
GO:0001738 IMP morphogenesis of a polarized epithelium
GO:0001755 IMP neural crest cell migration
GO:0001942 IMP hair follicle development
GO:0005178 IDA integrin binding
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005604 IDA basement membrane
GO:0005605 IDA basal lamina
GO:0005606 IEA laminin-1 complex
GO:0005610 IEA laminin-5 complex
GO:0005615 IEA extracellular space
GO:0005634 IEA nucleus
GO:0007229 IEA integrin-mediated signaling pathway
GO:0007517 IMP muscle organ development
GO:0009887 IMP organ morphogenesis
GO:0016331 IMP morphogenesis of embryonic epithelium
GO:0016477 IEA cell migration
GO:0030155 IEA regulation of cell adhesion
GO:0030324 IMP lung development
GO:0030334 IEA regulation of cell migration
GO:0031012 IEA extracellular matrix
GO:0034446 IEA substrate adhesion-dependent cell spreading
GO:0042127 IMP regulation of cell proliferation
GO:0042384 IMP cilium assembly
GO:0042475 IMP odontogenesis of dentin-containing tooth
GO:0043259 IPI laminin-10 complex
GO:0045995 IEA regulation of embryonic development
GO:0048754 IMP branching morphogenesis of an epithelial tube
GO:0060445 IMP branching involved in salivary gland morphogenesis
GO:0070062 IEA extracellular vesicular exosome
GO:0090002 IMP establishment of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000045126 lama5-001 protein_coding Danio_rerio 0 627
ENST00000252999 LAMA5-001 protein_coding Homo_sapiens 0 8257
ENST00000370677 LAMA5-003 processed_transcript Homo_sapiens 0 1297
ENST00000370691 LAMA5-005 retained_intron Homo_sapiens 0 540
ENST00000468786 LAMA5-012 retained_intron Homo_sapiens 0 196

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