C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GATS protein-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000016088 Gatsl2-001 ENSMUSG00000015944 10090 + 5:134099711-134144343 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016088
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016088 2.828±0.40 3.308±0.22 3.766±0.59 8.483±1.70 3.032±1.20 1.537±0.26 4.087±0.25 10.190±0.75 0.294±0.13 3.568±0.29 11.983±1.22 2.589±0.43 2.333±1.20 0.517±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052L CIL_00052L_0003 CGP 5:134099711-134176774

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000328453 GATS-011 nonsense_mediated_decay Homo_sapiens 0 758
ENST00000414739 GATS-009 nonsense_mediated_decay Homo_sapiens 0 758
ENST00000435519 GATS-010 nonsense_mediated_decay Homo_sapiens 0 756
ENST00000436886 GATS-014 protein_coding Homo_sapiens 0 603
ENST00000454084 GATS-004 protein_coding Homo_sapiens 0 510
ENST00000538588 GATS-013 processed_transcript Homo_sapiens 0 520
ENST00000543273 GATS-002 nonsense_mediated_decay Homo_sapiens 0 754
ENST00000544802 RP11-396K3.1-002 processed_transcript Homo_sapiens 0 213
ENST00000616305 GATSL2-001 protein_coding Homo_sapiens 0 1271
ENST00000616377 GTF2IP1-010 processed_transcript Homo_sapiens 0 213
ENST00000621495 CH17-232I21.1-001 processed_pseudogene Homo_sapiens 2.99878e-43 176
ENST00000622472 GATSL2-002 retained_intron Homo_sapiens 0 867
ENST00000622829 GTF2IP1-002 processed_transcript Homo_sapiens 0 213

Loading