C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta 1 class VI
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000016399 Tubb1-001 ENSMUSG00000016255 10090 + 2:174450695-174457882 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016399
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016399 0.068±0.01 0.242±0.09 0.044±0.03 0.244±0.02 0.221±0.11 0.088±0.03 2.299±0.31 0.207±0.06 9.987±11.91 8.898±1.26 0.075±0.02 0.182±0.10 2.498±1.72 0.050±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001B3 CIL_0001B3_0002 CGP 2:174427493-174457882
CIL_000695 CIL_000695_0003 CGP 2:174450695-174464105

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IDA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005737 IEA cytoplasm
GO:0005874 IDA microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IDA microtubule-based process
GO:0051225 IDA spindle assembly
GO:0051258 IEA protein polymerization
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000131187 tubb4b-201 protein_coding Danio_rerio 0 634
ENSDART00000066859 tubb4b-001 protein_coding Danio_rerio 0 628
ENST00000217133 TUBB1-001 protein_coding Homo_sapiens 0 1423

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