C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB11 family interacting protein 4 (class II)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000017783 Rab11fip4-001 ENSMUSG00000017639 10090 + 11:79591212-79698023 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000017783
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000017783 0.401±0.16 0.236±0.09 0.178±0.11 23.649±8.70 0.677±0.22 7.533±0.00 0.147±0.10 7.502±4.06 0.766±0.57 0.033±0.02 0.928±0.25 5.521±2.26 1.884±0.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000VQ CIL_0000VQ_0002 CGP 11:79526560-79698023

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000910 ISS cytokinesis
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005615 IEA extracellular space
GO:0005768 ISS endosome
GO:0006810 IEA transport
GO:0017137 ISS Rab GTPase binding
GO:0030139 ISS endocytic vesicle
GO:0030306 ISS ADP-ribosylation factor binding
GO:0030496 ISS midbody
GO:0032154 ISS cleavage furrow
GO:0042803 ISS protein homodimerization activity
GO:0055038 ISS recycling endosome membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000394744 RAB11FIP4-002 protein_coding Homo_sapiens 0 1803
ENST00000578148 RAB11FIP4-011 processed_transcript Homo_sapiens 0 202
ENST00000581460 RAB11FIP4-010 retained_intron Homo_sapiens 0 693
ENST00000583755 RAB11FIP4-007 protein_coding Homo_sapiens 0 512
ENST00000585058 RAB11FIP4-003 retained_intron Homo_sapiens 8.00001e-41 174
ENST00000621161 RAB11FIP4-001 protein_coding Homo_sapiens 0 2279

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