C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAH (Asp-Glu-Ala-His) box polypeptide 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000018569 Dhx40-001 ENSMUSG00000018425 10090 - 11:86768846-86807746 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018569
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018569 4.125±1.42 4.517±0.87 9.667±1.15 5.843±1.13 3.485±0.67 1.893±0.37 2.441±0.19 6.573±0.82 3.777±0.45 4.713±0.69 3.228±0.32 5.653±3.76 9.225±3.98 16.059±4.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VS CIL_0008VS_0002 VISTA 11:86270110-86871719
CIL_0008Y2 CIL_0008Y2_0002 VISTA 11:86286196-86887829
CIL_00081F CIL_00081F_0002 VISTA 11:86323484-86925483

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000251241 DHX40-001 protein_coding Homo_sapiens 0 4037
ENST00000425628 DHX40-002 protein_coding Homo_sapiens 0 2712
ENST00000538926 DHX40-007 protein_coding Homo_sapiens 0 503
ENST00000577549 DHX40-003 retained_intron Homo_sapiens 0 893
ENST00000577596 DHX40-006 nonsense_mediated_decay Homo_sapiens 0 429
ENST00000578204 DHX40-008 retained_intron Homo_sapiens 0 381
ENST00000580030 DHX40-010 protein_coding Homo_sapiens 0 1107
ENST00000580218 DHX40-004 nonsense_mediated_decay Homo_sapiens 0 628
ENST00000583439 DHX40-005 retained_intron Homo_sapiens 0 455
ENST00000584385 DHX40-009 protein_coding Homo_sapiens 0 604
ENST00000588725 DHX40P1-001 unprocessed_pseudogene Homo_sapiens 0 1844

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