C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Y box binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000007699 YBX2-001 ENSG00000006047 9606 - 17:7288252-7294564 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyTestisENST00000007699
Transcript ID Kidney Testis
ENST00000007699 0.737±0.00 739.039±502.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003729 IEA mRNA binding
GO:0003730 IEA mRNA 3'-UTR binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005844 IEA polysome
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007283 TAS spermatogenesis
GO:0007286 IEA spermatid development
GO:0008289 IEA lipid binding
GO:0009386 TAS translational attenuation
GO:0017148 IEA negative regulation of translation
GO:0030529 IEA ribonucleoprotein complex
GO:0043021 IEA ribonucleoprotein complex binding
GO:0045182 IEA translation regulator activity
GO:0048255 IEA mRNA stabilization
GO:0048477 IEA oogenesis
GO:0048599 IEA oocyte development
GO:0051100 IEA negative regulation of binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018698 Ybx2-001 protein_coding Mus_musculus 0 1777
ENSMUST00000108601 Ybx2-002 protein_coding Mus_musculus 0 1345
ENSMUST00000149194 Ybx2-003 protein_coding Mus_musculus 0 1308
ENSMUST00000148395 Ybx2-005 retained_intron Mus_musculus 0 623
ENSMUST00000130377 Ybx2-004 retained_intron Mus_musculus 0 523
ENSMUST00000079644 Ybx1-001 protein_coding Mus_musculus 9.80909e-45 185
ENSMUST00000117567 Gm11560-001 processed_pseudogene Mus_musculus 5e-38 163
ENSMUST00000123576 E130201H02Rik-001 processed_pseudogene Mus_musculus 5e-38 163
ENSMUST00000119046 Gm15808-001 processed_pseudogene Mus_musculus 1e-28 132
ENSMUST00000142884 Ybx1-005 processed_transcript Mus_musculus 1e-18 99
ENSMUST00000139897 Ybx1-003 processed_transcript Mus_musculus 1e-18 99

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