C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chemokine (C-X-C motif) ligand 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000019064 Cxcl16-001 ENSMUSG00000018920 10090 - 11:70453983-70459984 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000019064
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000019064 14.157±6.33 12.095±1.28 4.977±0.62 0.670±0.24 28.517±7.90 12.500±2.56 6.092±0.63 30.051±1.69 2.839±2.17 35.734±2.67 0.324±0.27 21.376±8.74 0.778±0.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001RD CIL_0001RD_0002 CGP 11:70451919-70459984
CIL_0001RE CIL_0001RE_0002 CGP 11:70453983-70466202

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005041 IDA low-density lipoprotein receptor activity
GO:0005044 IDA scavenger receptor activity
GO:0005615 IDA extracellular space
GO:0006898 IEA receptor-mediated endocytosis
GO:0008009 IDA chemokine activity
GO:0010818 IDA T cell chemotaxis
GO:0016021 IDA integral component of membrane
GO:0030307 IEA positive regulation of cell growth
GO:0030335 IEA positive regulation of cell migration
GO:0034097 IEA response to cytokine
GO:0034341 IEA response to interferon-gamma
GO:0034612 IEA response to tumor necrosis factor
GO:0048247 IEA lymphocyte chemotaxis
GO:0071222 IDA cellular response to lipopolysaccharide

Homologs

No Homologs available.

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