C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chemokine (C-X-C motif) ligand 16
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018920 Cxcl16 10090 - 11:70453983-70459984 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019064 Cxcl16-001 70453983-70459984 protein_coding
  ENSMUST00000126391 Cxcl16-002 70454238-70459408 nonsense_mediated_decay
  ENSMUST00000154475 Cxcl16-004 70455190-70459832 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000019064ENSMUST00000126391
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000019064 14.157±6.33 12.095±1.28 4.977±0.62 0.670±0.24 28.517±7.90 12.500±2.56 6.092±0.63 30.051±1.69 2.839±2.17 35.734±2.67 0.324±0.27 21.376±8.74 0.778±0.65
ENSMUST00000126391 11.596±0.00 N/A 9.369±0.02 0.525±0.30 N/A 7.446±0.04 N/A 23.843±2.11 1.633±1.33 N/A 0.508±0.34 8.024±0.60 1.891±1.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001RD CIL_0001RD_0002 CGP 11:70451919-70459984
CIL_0001RE CIL_0001RE_0002 CGP 11:70453983-70466202

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005041 IDA low-density lipoprotein receptor activity
GO:0005044 IDA scavenger receptor activity
GO:0005615 IDA extracellular space
GO:0006898 IEA receptor-mediated endocytosis
GO:0008009 IDA chemokine activity
GO:0010818 IDA T cell chemotaxis
GO:0016021 IDA integral component of membrane
GO:0030307 IEA positive regulation of cell growth
GO:0030335 IEA positive regulation of cell migration
GO:0034097 IEA response to cytokine
GO:0034341 IEA response to interferon-gamma
GO:0034612 IEA response to tumor necrosis factor
GO:0048247 IEA lymphocyte chemotaxis
GO:0071222 IDA cellular response to lipopolysaccharide

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000161921 CXCL16 chemokine (C-X-C motif) ligand 16 protein_coding Homo_sapiens

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