C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: anti-silencing function 1A histone chaperone
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020004 Asf1a-201 ENSMUSG00000019857 10090 + 10:53596961-53609213 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020004
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020004 3.183±0.71 1.538±0.35 3.339±0.44 6.375±4.00 1.998±0.31 2.016±0.18 2.302±0.46 2.498±0.34 6.225±4.79 2.815±0.82 2.835±0.70 3.287±1.06 7.401±1.91 2.819±0.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000991 CIL_000991_0002 VISTA 10:53043568-53644849
CIL_0005OT CIL_0005OT_0002 CGP 10:53536329-53630439
CIL_0005OS CIL_0005OS_0002 CGP 10:53596961-53750909

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0001649 IGI osteoblast differentiation
GO:0003682 IDA chromatin binding
GO:0005515 IEA protein binding
GO:0006281 IEA DNA repair
GO:0006334 IEA nucleosome assembly
GO:0006335 IEA DNA replication-dependent nucleosome assembly
GO:0006336 IEA DNA replication-independent nucleosome assembly
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0042393 IEA histone binding
GO:0042692 IGI muscle cell differentiation
GO:0043234 IEA protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229595 ASF1A-001 protein_coding Homo_sapiens 0 1622
ENST00000368478 MCM9-007 processed_transcript Homo_sapiens 1e-29 134
ENST00000505485 MCM9-006 processed_transcript Homo_sapiens 0 220
ENST00000511766 ASF1A-003 retained_intron Homo_sapiens 0 579

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