C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neural precursor cell expressed, developmentally down-regulated gene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020163 Nedd1-201 ENSMUSG00000019988 10090 - 10:92684746-92722420 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020163
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020163 3.749±1.45 1.905±0.53 4.710±0.81 2.648±1.71 3.740±0.85 2.577±0.46 5.812±1.36 2.490±0.17 4.928±2.61 3.749±0.43 4.840±0.66 4.444±1.67 6.224±2.14 6.092±1.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UU CIL_0007UU_0002 VISTA 10:92255726-92857808

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000242 IDA pericentriolar material
GO:0000922 IDA spindle pole
GO:0000924 ISO gamma-tubulin ring complex, centrosomal
GO:0005737 IDA cytoplasm
GO:0005813 ISO centrosome
GO:0005814 IDA centriole
GO:0007019 ISO microtubule depolymerization
GO:0007067 IEA mitotic nuclear division
GO:0031109 ISO microtubule polymerization or depolymerization
GO:0036064 IDA ciliary basal body
GO:0045177 IDA apical part of cell
GO:0070201 ISO regulation of establishment of protein localization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000266742 NEDD1-001 protein_coding Homo_sapiens 0 2100
ENST00000411739 NEDD1-002 protein_coding Homo_sapiens 0 1777
ENST00000429527 NEDD1-004 protein_coding Homo_sapiens 0 2126
ENST00000457368 NEDD1-005 protein_coding Homo_sapiens 0 1895
ENST00000553609 NEDD1-011 protein_coding Homo_sapiens 0 638
ENST00000554226 NEDD1-007 protein_coding Homo_sapiens 0 643
ENST00000555114 NEDD1-010 processed_transcript Homo_sapiens 0 483
ENST00000555806 NEDD1-009 nonsense_mediated_decay Homo_sapiens 0 331
ENST00000557092 NEDD1-008 protein_coding Homo_sapiens 0 435
ENST00000557400 NEDD1-013 processed_transcript Homo_sapiens 0 658
ENST00000557454 NEDD1-012 processed_transcript Homo_sapiens 0 612
ENST00000557478 NEDD1-006 protein_coding Homo_sapiens 0 652
ENST00000557644 NEDD1-003 protein_coding Homo_sapiens 0 2098

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