C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein D3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020397 Snrpd3-001 ENSMUSG00000020180 10090 + 10:75517551-75537373 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020397
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020397 5.199±1.39 9.399±0.13 14.148±6.89 6.600±1.54 7.248±0.35 7.596±0.32 16.640±7.17 4.038±0.40 14.920±0.71 6.381±2.19 9.591±6.10 6.000±2.13

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000387 ISS spliceosomal snRNP assembly
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005683 ISS U7 snRNP
GO:0005685 ISS U1 snRNP
GO:0005687 ISS U4 snRNP
GO:0005689 IEA U12-type spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0005829 ISS cytosol
GO:0019899 IEA enzyme binding
GO:0034709 ISS methylosome
GO:0034715 ISS pICln-Sm protein complex
GO:0034719 ISS SMN-Sm protein complex
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome
GO:0071013 IEA catalytic step 2 spliceosome
GO:0071208 IDA histone pre-mRNA DCP binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000215829 SNRPD3-001 protein_coding Homo_sapiens 0 577
ENST00000402849 SNRPD3-003 protein_coding Homo_sapiens 0 470
ENST00000404603 SNRPD3-005 nonsense_mediated_decay Homo_sapiens 0 577
ENST00000439775 SNRPD3-004 nonsense_mediated_decay Homo_sapiens 0 272
ENST00000468770 SNRPD3-002 retained_intron Homo_sapiens 2.00386e-43 180

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