C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCR4-NOT transcription complex, subunit 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020624 Cnot6-201 ENSMUSG00000020362 10090 - 11:49674713-49712710 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000020624
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000020624 3.496±1.45 4.738±1.69 4.394±1.50 3.356±1.09 1.175±0.00 2.702±0.39 5.244±2.81 4.944±0.66 12.591±3.76 9.963±4.55 5.538±2.17

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0004532 ISS exoribonuclease activity
GO:0004535 ISS poly(A)-specific ribonuclease activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006417 IEA regulation of translation
GO:0030014 ISS CCR4-NOT complex
GO:0031047 IEA gene silencing by RNA
GO:0043928 ISS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0046872 IEA metal ion binding
GO:0070966 ISS nuclear-transcribed mRNA catabolic process, no-go decay
GO:0090503 IEA RNA phosphodiester bond hydrolysis, exonucleolytic
GO:2000327 ISS positive regulation of ligand-dependent nuclear receptor transcription coactivator activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261951 CNOT6-201 protein_coding Homo_sapiens 0 3066
ENST00000393356 CNOT6-001 protein_coding Homo_sapiens 0 2752
ENST00000502447 CNOT6-003 processed_transcript Homo_sapiens 0 514
ENST00000504343 CNOT6-004 protein_coding Homo_sapiens 0 846
ENST00000507016 CNOT6-005 processed_transcript Homo_sapiens 0 265
ENST00000510148 CNOT6-006 processed_transcript Homo_sapiens 0 324
ENST00000618123 CNOT6-202 protein_coding Homo_sapiens 0 2752

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