C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCR4-NOT transcription complex, subunit 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393356 CNOT6-001 ENSG00000113300 9606 + 5:180494433-180578405 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonOvaryPlacentaENST00000393356
Transcript ID Brain Colon Ovary Placenta
ENST00000393356 1.198±0.00 0.990±0.00 0.648±0.07 0.370±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 TAS nuclear-transcribed mRNA poly(A) tail shortening
GO:0003723 IEA RNA binding
GO:0004532 IDA exoribonuclease activity
GO:0004535 IDA poly(A)-specific ribonuclease activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006417 IEA regulation of translation
GO:0008284 IMP positive regulation of cell proliferation
GO:0010467 TAS gene expression
GO:0010606 IMP positive regulation of cytoplasmic mRNA processing body assembly
GO:0016020 IDA membrane
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0030014 IDA CCR4-NOT complex
GO:0035195 TAS gene silencing by miRNA
GO:0043928 IDA exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0046872 IEA metal ion binding
GO:0070966 IMP nuclear-transcribed mRNA catabolic process, no-go decay
GO:0090503 IEA RNA phosphodiester bond hydrolysis, exonucleolytic
GO:2000327 IDA positive regulation of ligand-dependent nuclear receptor transcription coactivator activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000145353 Cnot6-001 protein_coding Mus_musculus 0 3330
ENSMUST00000020624 Cnot6-201 protein_coding Mus_musculus 0 2752
ENSMUST00000109183 Cnot6-002 processed_transcript Mus_musculus 0 2132
ENSMUST00000145424 Cnot6-003 processed_transcript Mus_musculus 0 483
ENSMUST00000151090 Cnot6-004 processed_transcript Mus_musculus 0 416

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