C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: radical S-adenosyl methionine domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020970 Rsad2-001 ENSMUSG00000020641 10090 - 12:26442753-26456452 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020970
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020970 2.714±0.44 9.666±5.32 1.170±0.12 0.068±0.03 2.065±0.65 2.579±0.43 3.612±1.46 11.206±1.95 8.033±14.18 1.582±0.61 0.740±0.14 1.233±0.45 7.454±2.69 0.051±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001EH CIL_0001EH_0002 CGP 12:26306797-26456452
CIL_0002BI CIL_0002BI_0002 CGP 12:26442753-26479835

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001503 IEA ossification
GO:0003674 ND molecular_function
GO:0003824 IEA catalytic activity
GO:0005515 IPI protein binding
GO:0005739 IEA mitochondrion
GO:0005741 IEA mitochondrial outer membrane
GO:0005743 IEA mitochondrial inner membrane
GO:0005783 IEA endoplasmic reticulum
GO:0005789 ISS endoplasmic reticulum membrane
GO:0005811 IDA lipid particle
GO:0008152 IEA metabolic process
GO:0009615 IMP response to virus
GO:0030278 IEA regulation of ossification
GO:0034157 IMP positive regulation of toll-like receptor 7 signaling pathway
GO:0034165 IMP positive regulation of toll-like receptor 9 signaling pathway
GO:0035710 IMP CD4-positive, alpha-beta T cell activation
GO:0043367 IMP CD4-positive, alpha-beta T cell differentiation
GO:0043621 ISS protein self-association
GO:0045071 IMP negative regulation of viral genome replication
GO:0045087 IEA innate immune response
GO:0046872 IEA metal ion binding
GO:0050709 ISS negative regulation of protein secretion
GO:0051539 ISS 4 iron, 4 sulfur cluster binding
GO:0051607 IDA defense response to virus
GO:2000553 IMP positive regulation of T-helper 2 cell cytokine production

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000382040 RSAD2-001 protein_coding Homo_sapiens 0 937
ENST00000442639 RSAD2-003 protein_coding Homo_sapiens 0 283
ENST00000477834 RSAD2-002 processed_transcript Homo_sapiens 0 322

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