C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: secernin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021249 Scrn2-001 ENSMUSG00000020877 10090 + 11:97029938-97033958 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021249
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021249 3.100±0.51 7.170±1.79 3.456±0.09 2.799±0.80 3.937±0.61 6.289±0.48 4.279±0.75 42.321±3.63 15.087±9.58 5.434±0.78 6.261±0.43 7.317±3.63 1.923±0.35 2.195±0.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097B CIL_00097B_0002 VISTA 11:96441475-97042608
CIL_0007WA CIL_0007WA_0002 VISTA 11:96526222-97127190
CIL_0007RQ CIL_0007RQ_0002 VISTA 11:96583318-97187851

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0006508 IEA proteolysis
GO:0008150 ND biological_process
GO:0016805 IEA dipeptidase activity
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290216 SCRN2-001 protein_coding Homo_sapiens 0 1347
ENST00000407215 SCRN2-002 protein_coding Homo_sapiens 0 1256
ENST00000578323 SCRN2-013 protein_coding Homo_sapiens 0 599
ENST00000579856 SCRN2-008 nonsense_mediated_decay Homo_sapiens 0 728
ENST00000581645 SCRN2-003 nonsense_mediated_decay Homo_sapiens 0 1247
ENST00000582459 SCRN2-004 nonsense_mediated_decay Homo_sapiens 0 876
ENST00000582656 SCRN2-012 retained_intron Homo_sapiens 0 239
ENST00000583090 SCRN2-010 nonsense_mediated_decay Homo_sapiens 0 244
ENST00000584123 SCRN2-006 protein_coding Homo_sapiens 0 1291
ENST00000584567 SCRN2-011 protein_coding Homo_sapiens 0 654

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