C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM12 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000293406 LSM12-201 ENSG00000161654 9606 - 17:44034636-44066735 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000293406
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000293406 12.881±0.00 5.561±0.00 1.928±0.00 7.424±5.61 8.692±5.66 4.808±2.08 6.284±4.88 7.729±3.76 6.021±3.30 6.340±3.31 14.027±10.91 10.693±2.67 12.180±1.72 23.506±5.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0001 VISTA 17:43966083-44567774
CIL_00059L CIL_00059L_0001 CGP 17:44011188-44067619
CIL_0007BO CIL_0007BO_0001 CGP 17:44034635-44076344

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021297 Lsm12-001 protein_coding Mus_musculus 0 2355
ENSMUST00000107156 Lsm12-005 protein_coding Mus_musculus 0 1784
ENSMUST00000161387 Gm9727-001 processed_pseudogene Mus_musculus 0 893
ENSMUST00000137930 Lsm12-003 processed_transcript Mus_musculus 0 529
ENSMUST00000140429 Lsm12-004 processed_transcript Mus_musculus 0 444
ENSMUST00000153276 Lsm12-002 processed_transcript Mus_musculus 0 329

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